Markov Properties and Quantum Experiments, in W. Demopoulos and I. Pitowsky, eds. Physical Theory and Its Interpretation: Essays in Honor of Jeffrey Bub, Springer 2006.
(com Chu, T. and David Danks) Data Driven Methods for Granger Causality and Contemporaneous Causality with Non-Linear Corrections: Climate Teleconnection Mechanisms, 2004.
Review of Phil Dowe and Paul Nordhoff: Cause and Chance: Causation in an Indeterministic World, Mind, 2005.
(with Eberhardt, Frederick, and Richard Scheines). N-1 Experiments Suffice to Determine the Causal Relations Among N Variables, 2004.
(com F. Eberhardt and R. Scheines), Log2(N) Experiments are Sufficient, and in the Worst Case Necessary, for Identifying Causal Structure, UAI Proceedings, 2005
(com Handley, Daniel, Nicoleta Serban, David Peters, Robert O'Doherty, Melvin Field, Larry Wasserman, Peter Spirtes, and Richard Scheines), Evidence of systematic expressed sequence tag IMAGE clone cross-hybridization on cDNA microarrays, Genomics, Vol. 83, Issue 6 (June, 2004), 1169-1175.
The Automation of Discovery,Daedelus, Vol. Winter (2004), 69-77.
(com Serban, Nicoleta, Larry Wasserman, David Peters, Peter Spirtes, Robert O'Doherty, Dan Handley, and Richard Scheines). Analysis of microarray data for treated fat cells, (2003).
(com Danks, David, and Peter Spirtes). The Computational and Experimental Complexity of Gene Perturbations for Regulatory Network Search, (2003).
(com Silva, Ricardo, Richard Scheines, and Peter Spirtes). Learning Measurement Models for Unobserved Variables, UAI '03, Proceedings of the 19th Conference in Uncertainty in Artificial Intelligence, August 7–10, 2003, Acapulco, Mexico (2003), 543-550.
(com Danks, David and Peter Spirtes). The Computational and Experimental Complexity of Gene Perturbations for Regulatory Network Search,Proceedings of IJCAI-2003 Workshop on Learning Graphical Models for Computational Genomics, (2003), 22-31.
(com Frank Wimberly, Thomas Heiman, and Joseph Ramsey). Experiments on the Accuracy of Algorithms for Inferring the Structure of Genetic Regulatory Networks from Microarray Expression Levels, International Joint Conference on Artificial Intelligence Workshop, 2003
A Semantics and Methodology for Ceteris Paribus Hypotheses,Erkenntnis, Vol. 57 (2002), 395-405.